Index

A

abstract_to_features() (tethne.classes.corpus.Corpus method) (tethne.persistence.hdf5.corpus.HDF5Corpus method) add_edge() (tethne.persistence.hdf5.graphcollection.HDF5Graph method) add_features() (tethne.classes.corpus.Corpus method) add_node() (tethne.persistence.hdf5.graphcollection.HDF5Graph method) algorithm() (in module tethne.analyze.collection) all_papers() (tethne.classes.corpus.Corpus method) apply_stoplist() (tethne.classes.corpus.Corpus method) attachment_probability() (in module tethne.analyze.collection) attr_distribution() (tethne.classes.graphcollection.GraphCollection method)

attribs_to_string() (in module tethne.utilities) author_cocitation() (in module tethne.networks.authors) author_coinstitution() (in module tethne.networks.authors) author_coupling() (in module tethne.networks.papers) author_institution() (in module tethne.networks.authors) author_papers() (in module tethne.networks.authors) author_theta() (tethne.model.managers.tap.TAPModelManager method) authors() (tethne.classes.paper.Paper method)

B

BaseCoder (class in tethne.services.geocode) BaseModel (class in tethne.model.basemodel) bibliographic_coupling() (in module tethne.networks.papers)

build() (tethne.classes.graphcollection.GraphCollection method) (tethne.managers.corpusmanager.SampleDFRManager method) (tethne.managers.gcmanager.GenericGraphCollectionManager method) (tethne.model.managers.ModelManager method) (tethne.model.managers.SocialModelManager method) (tethne.model.social.tapmodel.TAPModel method) burstness() (in module tethne.analyze.corpus)

C

citation_count() (in module tethne.networks.helpers) coauthors() (in module tethne.networks.authors) cocitation() (in module tethne.networks.papers) code() (tethne.services.geocode.GoogleCoder class method) (tethne.services.geocode.YahooCoder method) code_list() (tethne.services.geocode.BaseCoder method) code_this() (tethne.services.geocode.BaseCoder method) coder (tethne.services.geocode.GoogleCoder attribute) CollectionManager (class in tethne.managers.collectionmanager) compose() (tethne.classes.graphcollection.GraphCollection method) concat_list() (in module tethne.utilities)

connected() (in module tethne.analyze.collection) contains() (in module tethne.utilities) convert() (in module tethne.readers.wos) cooccurrence() (in module tethne.networks.features) Corpus (class in tethne.classes.corpus) corpus_from_dir() (in module tethne.readers.dfr) (in module tethne.readers.scopus) (in module tethne.readers.wos) CorpusManager (class in tethne.managers.corpusmanager) cosine_distance() (in module tethne.analyze.features) cosine_similarity() (in module tethne.analyze.features)

D

DataError, [1] delta() (in module tethne.analyze.collection) dict_from_node() (in module tethne.utilities) Dictionary (class in tethne.utilities) dimension() (tethne.model.basemodel.BaseModel method) (tethne.model.corpus.dtmmodel.DTMModel method) (tethne.model.corpus.ldamodel.LDAModel method) dimension_items() (tethne.model.basemodel.BaseModel method) (tethne.model.corpus.dtmmodel.DTMModel method) (tethne.model.corpus.ldamodel.LDAModel method)

dimension_relationship() (tethne.model.basemodel.BaseModel method) (tethne.model.corpus.dtmmodel.DTMModel method) (tethne.model.corpus.ldamodel.LDAModel method) direct_citation() (in module tethne.networks.papers) distance() (in module tethne.analyze.features) (in module tethne.networks.topics) distribution() (tethne.classes.corpus.Corpus method) DTMModel (class in tethne.model.corpus.dtmmodel) DTMModelManager (class in tethne.model.managers.dtm)

E

edge_distribution() (tethne.classes.graphcollection.GraphCollection method) edge_history() (tethne.classes.graphcollection.GraphCollection method)

edges() (tethne.classes.graphcollection.GraphCollection method) (tethne.persistence.hdf5.graphcollection.HDF5Graph method)

F

feature_burstness() (in module tethne.analyze.corpus) feature_counts() (tethne.classes.corpus.Corpus method) feature_distribution() (tethne.classes.corpus.Corpus method) filter_features() (tethne.classes.corpus.Corpus method) (tethne.persistence.hdf5.corpus.HDF5Corpus method)

from_dir() (in module tethne.readers.dfr) (in module tethne.readers.scopus) (in module tethne.readers.wos) from_gerrish() (in module tethne.model.corpus.dtmmodel) from_hdf5() (in module tethne.persistence.hdf5) (in module tethne.persistence.hdf5.corpus) (in module tethne.persistence.hdf5.dtmmodel) (in module tethne.persistence.hdf5.graphcollection) (in module tethne.persistence.hdf5.ldamodel) (in module tethne.persistence.hdf5.tapmodel) from_mallet() (in module tethne.model.corpus.ldamodel)

G

GenericGraphCollectionManager (class in tethne.managers.gcmanager) GerrishLoader (class in tethne.model.corpus.dtmmodel) get_axes() (tethne.classes.corpus.Corpus method) get_edges() (tethne.persistence.hdf5.graphcollection.HDF5EdgeAttributes method) (tethne.persistence.hdf5.graphcollection.SparseArray method) get_h5file() (in module tethne.persistence.hdf5.util) get_key() (tethne.writers.graph.TethneGraphMLWriter method) get_location() (tethne.services.geocode.GoogleCoder method) (tethne.services.geocode.YahooCoder method) get_neighbors() (tethne.persistence.hdf5.graphcollection.SparseArray method) get_nodes() (tethne.persistence.hdf5.graphcollection.HDF5NodeAttributes method) get_or_create_array() (in module tethne.persistence.hdf5.util) get_or_create_group() (in module tethne.persistence.hdf5.util)

get_or_create_table() (in module tethne.persistence.hdf5.util) get_slice() (tethne.classes.corpus.Corpus method) get_slices() (tethne.classes.corpus.Corpus method) global_closeness_centrality() (in module tethne.analyze.graph) GoogleCoder (class in tethne.services.geocode) gram_type (tethne.managers.corpusmanager.SampleDFRManager attribute) GramGenerator (class in tethne.readers.dfr) graph() (tethne.model.social.tapmodel.TAPModel method) graph_collection() (tethne.model.managers.tap.TAPModelManager method) GraphCollection (class in tethne.classes.graphcollection) GraphCollectionManager (class in tethne.managers.gcmanager)

H

HDF5ArrayDict (class in tethne.persistence.hdf5.util) HDF5Axes (class in tethne.persistence.hdf5.util) HDF5Axis (class in tethne.persistence.hdf5.util) HDF5Corpus (class in tethne.persistence.hdf5.corpus) HDF5DTMModel (class in tethne.persistence.hdf5.dtmmodel) HDF5EdgeAttributes (class in tethne.persistence.hdf5.graphcollection) HDF5Features (class in tethne.persistence.hdf5.util) HDF5FeatureSet (class in tethne.persistence.hdf5.util)

HDF5FeatureValues (class in tethne.persistence.hdf5.util) HDF5Graph (class in tethne.persistence.hdf5.graphcollection) HDF5GraphCollection (class in tethne.persistence.hdf5.graphcollection) HDF5LDAModel (class in tethne.persistence.hdf5.ldamodel) HDF5Metadata (class in tethne.persistence.hdf5.util) HDF5NodeAttributes (class in tethne.persistence.hdf5.graphcollection) HDF5SparseValues (class in tethne.persistence.hdf5.util) HDF5TAPModel (class in tethne.persistence.hdf5.tapmodel)

I

index() (tethne.classes.corpus.Corpus method) indices() (tethne.classes.corpus.Corpus method) institutions() (in module tethne.networks.authors) item() (tethne.model.basemodel.BaseModel method) (tethne.model.corpus.dtmmodel.DTMModel method) (tethne.model.corpus.ldamodel.LDAModel method)

item_relationship() (tethne.model.basemodel.BaseModel method) (tethne.model.corpus.dtmmodel.DTMModel method) (tethne.model.corpus.ldamodel.LDAModel method) items() (tethne.persistence.hdf5.graphcollection.HDF5EdgeAttributes method) (tethne.persistence.hdf5.graphcollection.HDF5NodeAttributes method) (tethne.persistence.hdf5.util.HDF5ArrayDict method) (tethne.persistence.hdf5.util.vlarray_dict method) (tethne.readers.dfr.GramGenerator method) iteritems() (tethne.persistence.hdf5.util.HDF5ArrayDict method) (tethne.persistence.hdf5.util.HDF5FeatureValues method) (tethne.persistence.hdf5.util.HDF5SparseValues method) (tethne.persistence.hdf5.util.papers_table method) (tethne.persistence.hdf5.util.vlarray_dict method) (tethne.readers.dfr.GramGenerator method)

K

keys() (tethne.persistence.hdf5.util.HDF5ArrayDict method) (tethne.persistence.hdf5.util.papers_table method) (tethne.persistence.hdf5.util.vlarray_dict method) (tethne.readers.dfr.GramGenerator method) keyword_cooccurrence() (in module tethne.networks.features)

kl_divergence() (in module tethne.analyze.features)

L

lat_searchpath (tethne.services.geocode.YahooCoder attribute) latitude (tethne.services.geocode.Location attribute) LDAModel (class in tethne.model.corpus.ldamodel) list_topic() (tethne.model.corpus.dtmmodel.DTMModel method) (tethne.model.corpus.ldamodel.LDAModel method) list_topic_diachronic() (tethne.model.corpus.dtmmodel.DTMModel method)

list_topics() (tethne.model.corpus.dtmmodel.DTMModel method) (tethne.model.corpus.ldamodel.LDAModel method) load() (tethne.model.corpus.dtmmodel.GerrishLoader method) (tethne.model.corpus.ldamodel.MALLETLoader method) Location (class in tethne.services.geocode) lon_searchpath (tethne.services.geocode.YahooCoder attribute) longitude (tethne.services.geocode.Location attribute)

M

MALLETLoader (class in tethne.model.corpus.ldamodel) MALLETModelManager (class in tethne.model.managers.mallet) max_tries (tethne.services.geocode.BaseCoder attribute)

merge() (in module tethne.readers) ModelManager (class in tethne.model.managers) mutual_information() (in module tethne.networks.features)

N

N_axes() (tethne.classes.corpus.Corpus method) name_searchpath (tethne.services.geocode.YahooCoder attribute) next() (tethne.readers.dfr.GramGenerator method) ngrams() (in module tethne.readers.dfr) ngrams_from_dir() (in module tethne.readers.dfr)

node_distribution() (tethne.classes.graphcollection.GraphCollection method) node_global_closeness_centrality() (in module tethne.analyze.collection) (in module tethne.analyze.graph) node_history() (tethne.classes.graphcollection.GraphCollection method) nodes() (tethne.classes.graphcollection.GraphCollection method) (tethne.persistence.hdf5.graphcollection.HDF5Graph method) (tethne.persistence.hdf5.graphcollection.SparseArray method) num_edges() (tethne.persistence.hdf5.graphcollection.SparseArray method)

O

overlap() (in module tethne.utilities)

P

Paper (class in tethne.classes.paper) papers_table (class in tethne.persistence.hdf5.util) parse() (in module tethne.readers.wos) persistent (tethne.services.geocode.BaseCoder attribute) place (tethne.services.geocode.Location attribute) plot_attr_distribution() (tethne.classes.graphcollection.GraphCollection method) plot_burstness() (in module tethne.analyze.corpus) plot_distribution() (tethne.classes.corpus.Corpus method) plot_edge_distribution() (tethne.classes.graphcollection.GraphCollection method)

plot_ll() (tethne.model.managers.ModelManager method) plot_node_distribution() (tethne.classes.graphcollection.GraphCollection method) plot_sigma() (in module tethne.analyze.corpus) plot_topic_evolution() (tethne.model.managers.dtm.DTMModelManager method) prep() (tethne.managers.corpusmanager.SampleDFRManager method) (tethne.managers.gcmanager.GenericGraphCollectionManager method) (tethne.model.managers.ModelManager method) (tethne.model.social.tapmodel.TAPModel method) prime() (tethne.model.social.tapmodel.TAPModel method) print_topic() (tethne.model.corpus.dtmmodel.DTMModel method) (tethne.model.corpus.ldamodel.LDAModel method) print_topic_diachronic() (tethne.model.corpus.dtmmodel.DTMModel method) print_topics() (tethne.model.corpus.dtmmodel.DTMModel method) (tethne.model.corpus.ldamodel.LDAModel method)

R

read() (in module tethne.readers.dfr) (in module tethne.readers.scopus) (in module tethne.readers.wos) read_corpus() (in module tethne.readers.dfr) (in module tethne.readers.scopus) (in module tethne.readers.wos)

run() (tethne.managers.collectionmanager.CollectionManager method)

S

SampleDFRManager (class in tethne.managers.corpusmanager) sigma() (in module tethne.analyze.corpus) simplify_multigraph() (in module tethne.networks.helpers) sleep_interval (tethne.services.geocode.BaseCoder attribute) slice() (tethne.classes.corpus.Corpus method) slice_axis (tethne.managers.corpusmanager.SampleDFRManager attribute) slice_axis2 (tethne.managers.corpusmanager.SampleDFRManager attribute) slice_method (tethne.managers.corpusmanager.SampleDFRManager attribute)

SocialModelManager (class in tethne.model.managers) SparseArray (class in tethne.persistence.hdf5.graphcollection) step_size (tethne.managers.corpusmanager.SampleDFRManager attribute) strip_non_ascii() (in module tethne.utilities) strip_punctuation() (in module tethne.utilities) subdict() (in module tethne.utilities) swap() (in module tethne.utilities)

T

TAPModel (class in tethne.model.social.tapmodel) TAPModelManager (class in tethne.model.managers.tap) tethne (module) tethne.analyze (module) tethne.analyze.collection (module) tethne.analyze.corpus (module) tethne.analyze.features (module) tethne.analyze.graph (module) tethne.classes (module) tethne.classes.corpus (module) tethne.classes.graphcollection (module) tethne.classes.paper (module) tethne.managers (module) tethne.managers.collectionmanager (module) tethne.managers.corpusmanager (module) tethne.managers.gcmanager (module) tethne.model (module) tethne.model.basemodel (module) tethne.model.corpus (module) tethne.model.corpus.dtmmodel (module) tethne.model.corpus.ldamodel (module) tethne.model.managers (module) tethne.model.managers.dtm (module) tethne.model.managers.mallet (module) tethne.model.managers.tap (module) tethne.model.social (module) tethne.model.social.tapmodel (module) tethne.networks (module) tethne.networks.authors (module) tethne.networks.features (module) tethne.networks.helpers (module) tethne.networks.papers (module) tethne.networks.topics (module) tethne.persistence (module) tethne.persistence.hdf5 (module) tethne.persistence.hdf5.corpus (module)

tethne.persistence.hdf5.dtmmodel (module) tethne.persistence.hdf5.graphcollection (module) tethne.persistence.hdf5.ldamodel (module) tethne.persistence.hdf5.tapmodel (module) tethne.persistence.hdf5.util (module) tethne.readers (module) tethne.readers.dfr (module) tethne.readers.scopus (module) tethne.readers.wos (module) tethne.services (module) tethne.services.geocode (module) tethne.utilities (module) tethne.writers (module) tethne.writers.collection (module) tethne.writers.corpora (module) tethne.writers.graph (module) tethne.writers.matrix (module) TethneGraphMLWriter (class in tethne.writers.graph) timeout (tethne.services.geocode.BaseCoder attribute) to_documents() (in module tethne.writers.corpora) to_dtm_input() (in module tethne.writers.corpora) to_dxgmml() (in module tethne.writers.collection) to_gexf() (in module tethne.writers.graph) to_graph() (tethne.persistence.hdf5.graphcollection.HDF5Graph method) to_graphml() (in module tethne.writers.graph) to_hdf5() (in module tethne.persistence.hdf5) (in module tethne.persistence.hdf5.corpus) (in module tethne.persistence.hdf5.dtmmodel) (in module tethne.persistence.hdf5.graphcollection) (in module tethne.persistence.hdf5.ldamodel) (in module tethne.persistence.hdf5.tapmodel) to_sif() (in module tethne.writers.graph) to_table() (in module tethne.writers.graph) tokenize() (in module tethne.readers.dfr) top_cited() (in module tethne.networks.helpers) top_parents() (in module tethne.networks.helpers) topic_coupling() (in module tethne.networks.features) (in module tethne.networks.papers) topic_evolution() (tethne.model.corpus.dtmmodel.DTMModel method) topic_over_time() (tethne.model.managers.dtm.DTMModelManager method) (tethne.model.managers.mallet.MALLETModelManager method) transform() (tethne.classes.corpus.Corpus method)

V

values() (tethne.persistence.hdf5.util.HDF5ArrayDict method) (tethne.persistence.hdf5.util.papers_table method) (tethne.persistence.hdf5.util.vlarray_dict method) (tethne.readers.dfr.GramGenerator method)

vlarray_dict (class in tethne.persistence.hdf5.util)

W

window_size (tethne.managers.corpusmanager.SampleDFRManager attribute)

write() (tethne.managers.corpusmanager.SampleDFRManager method) (tethne.managers.gcmanager.GenericGraphCollectionManager method)

Y

yahoo_base (tethne.services.geocode.YahooCoder attribute)

YahooCoder (class in tethne.services.geocode)