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Index

A

add() (tethne.classes.feature.BaseFeatureSet method) (tethne.classes.graphcollection.GraphCollection method) add_context() (tethne.classes.feature.StructuredFeature method) add_data() (tethne.writers.graph.TethneGraphMLWriter method) add_edges() (tethne.writers.graph.TethneGraphMLWriter method) add_nodes() (tethne.writers.graph.TethneGraphMLWriter method) add_papers() (tethne.classes.corpus.Corpus method) algorithm() (in module tethne.analyze.collection) analyze() (tethne.classes.graphcollection.GraphCollection method) angular_similarity() (in module tethne.analyze.features) argmax() (in module tethne.utilities)

argmin() (in module tethne.utilities) argsort() (in module tethne.classes.feature) (in module tethne.utilities) as_matrix() (tethne.classes.feature.FeatureSet method) as_vector() (tethne.classes.feature.FeatureSet method) attachment_probability() (in module tethne.analyze.collection) attribs_to_string() (in module tethne.utilities) author_coupling() (in module tethne.networks.papers) author_papers() (in module tethne.networks.authors) authors (tethne.classes.paper.Paper attribute) ayjid (tethne.classes.paper.Paper attribute)

B

BaseFeatureSet (class in tethne.classes.feature) BaseParser (class in tethne.readers.base) bibliographic_coupling() (in module tethne.networks.papers)

build() (tethne.classes.graphcollection.GraphCollection method) burstness() (in module tethne.analyze.corpus)

C

citation_count() (in module tethne.networks.helpers) citations (tethne.classes.paper.Paper attribute) coauthors() (in module tethne.networks.authors) cocitation() (in module tethne.networks.papers) collapse() (tethne.classes.graphcollection.GraphCollection method) concat_fields (tethne.readers.base.IterParser attribute) (tethne.readers.base.RDFParser attribute) (tethne.readers.wos.WoSParser attribute) concat_list() (in module tethne.utilities) config (tethne.dao.tethnedao.DBConnection attribute) connected() (in module tethne.analyze.collection) contains() (in module tethne.utilities)

context_chunk() (tethne.classes.feature.StructuredFeature method) context_chunks() (tethne.classes.feature.StructuredFeature method) (tethne.classes.feature.StructuredFeatureSet method) cooccurrence() (in module tethne.networks.base) Corpus (class in tethne.classes.corpus) corpus_from_dir() (in module tethne.readers.wos) cosine_similarity() (in module tethne.analyze.features) cotopics() (in module tethne.networks.topics) count() (tethne.classes.feature.BaseFeatureSet method) coupling() (in module tethne.networks.base) CSVTest (class in tethne.tests.test_writers_graph)

D

DataError DBConnection (class in tethne.dao.tethnedao) DfRParser (class in tethne.readers.dfr) dict_from_node() (in module tethne.utilities) Dictionary (class in tethne.utilities)

direct_citation() (in module tethne.networks.papers) distance() (in module tethne.networks.topics) distribution() (tethne.classes.corpus.Corpus method) dobject (class in tethne.readers.base) documentCount() (tethne.classes.feature.BaseFeatureSet method)

E

edge_distribution() (tethne.classes.graphcollection.GraphCollection method) edge_history() (tethne.classes.graphcollection.GraphCollection method) edges() (tethne.classes.graphcollection.GraphCollection method) end_tag (tethne.readers.base.FTParser attribute) (tethne.readers.wos.WoSParser attribute) entry_class (tethne.readers.base.IterParser attribute) (tethne.readers.base.XMLParser attribute) (tethne.readers.dfr.DfRParser attribute) (tethne.readers.wos.WoSParser attribute) (tethne.readers.zotero.ZoteroParser attribute)

entry_element (tethne.readers.base.XMLParser attribute) entry_elements (tethne.readers.base.RDFParser attribute) (tethne.readers.zotero.ZoteroParser attribute) extend() (tethne.classes.feature.Feature method) extract_text() (in module tethne.readers.zotero)

F

Feature (class in tethne.classes.feature) feature() (in module tethne.classes.feature) feature_burstness() (in module tethne.analyze.corpus) feature_cooccurrence() (in module tethne.networks.features) feature_distribution() (tethne.classes.corpus.Corpus method) features (tethne.classes.corpus.Corpus attribute)

FeatureSet (class in tethne.classes.feature) feed() (tethne.utilities.MLStripper method) fit() (tethne.model.Model method) from_dir() (in module tethne.readers.wos) from_mallet() (tethne.model.corpus.mallet.LDAModel static method) FTParser (class in tethne.readers.base)

G

get_affiliation_details() (tethne.serialize.paper.Serialize method) get_auth_inst() (tethne.serialize.paper.SerializeUtility static method) get_data() (tethne.utilities.MLStripper method) get_details_from_inst_literal() (tethne.serialize.paper.Serialize method) get_key() (tethne.writers.graph.TethneGraphMLWriter method) getMaxAffiliationID() (in module tethne.dao.tethnedao) getMaxAffiliationInstanceID() (in module tethne.dao.tethnedao) getMaxAuthorID() (in module tethne.dao.tethnedao) getMaxAuthorInstanceID() (in module tethne.dao.tethnedao) getMaxCitationID() (in module tethne.dao.tethnedao)

getMaxCitationInstanceID() (in module tethne.dao.tethnedao) getMaxCorpusID() (in module tethne.dao.tethnedao) getMaxInstitutionID() (in module tethne.dao.tethnedao) getMaxInstitutionInstanceID() (in module tethne.dao.tethnedao) getMaxPaperID() (in module tethne.dao.tethnedao) global_closeness_centrality() (in module tethne.analyze.graph) GramGenerator (class in tethne.readers.dfr) GraphCollection (class in tethne.classes.graphcollection) GraphMLTest (class in tethne.tests.test_writers_graph)

H

handle() (tethne.readers.base.IterParser method) (tethne.readers.base.RDFParser method) handle_abstract() (tethne.readers.zotero.ZoteroParser method) handle_AF() (tethne.readers.wos.WoSParser method) handle_AU() (tethne.readers.wos.WoSParser method) handle_author() (tethne.readers.dfr.DfRParser method) (tethne.readers.zotero.ZoteroParser method) handle_authors_full() (tethne.readers.zotero.ZoteroParser method) handle_CR() (tethne.readers.wos.WoSParser method) handle_data() (tethne.utilities.MLStripper method) handle_date() (tethne.readers.zotero.ZoteroParser method) handle_documentType() (tethne.readers.zotero.ZoteroParser method) handle_identifier() (tethne.readers.zotero.ZoteroParser method)

handle_isPartOf() (tethne.readers.zotero.ZoteroParser method) handle_journaltitle() (tethne.readers.dfr.DfRParser method) handle_link() (tethne.readers.zotero.ZoteroParser method) handle_pages() (tethne.readers.zotero.ZoteroParser method) handle_pubdate() (tethne.readers.dfr.DfRParser method) handle_PY() (tethne.readers.wos.WoSParser method) handle_TI() (tethne.readers.wos.WoSParser method) handle_title() (tethne.readers.dfr.DfRParser method) (tethne.readers.zotero.ZoteroParser method) handle_unicode() (tethne.readers.dfr.DfRParser method) handle_VL() (tethne.readers.wos.WoSParser method)

I

index() (tethne.classes.corpus.Corpus method) (tethne.classes.graphcollection.GraphCollection method) index_by (tethne.classes.corpus.Corpus attribute) index_class (tethne.classes.corpus.Corpus attribute) (tethne.classes.streaming.StreamingCorpus attribute) index_feature() (tethne.classes.corpus.Corpus method) index_kwargs (tethne.classes.corpus.Corpus attribute) index_paper_by_attr() (tethne.classes.corpus.Corpus method) index_paper_by_feature() (tethne.classes.corpus.Corpus method) indexed_papers (tethne.classes.corpus.Corpus attribute)

indices (tethne.classes.corpus.Corpus attribute) is_end() (tethne.readers.base.FTParser method) (tethne.readers.base.XMLParser method) is_eof() (tethne.readers.base.FTParser method) (tethne.readers.base.XMLParser method) is_number() (in module tethne.tests.test_readers_wos) (in module tethne.utilities) is_start() (tethne.readers.base.FTParser method) (tethne.readers.base.XMLParser method) items() (tethne.classes.feature.BaseFeatureSet method) (tethne.classes.streaming.StreamingIndex method) (tethne.readers.dfr.GramGenerator method) iteritems() (tethne.classes.feature.BaseFeatureSet method) (tethne.classes.streaming.StreamingIndex method) IterParser (class in tethne.readers.base)

K

keys() (tethne.classes.streaming.StreamingIndex method) (tethne.readers.dfr.GramGenerator method) keyword_cooccurrence() (in module tethne.networks.features)

kl_divergence() (in module tethne.analyze.features)

L

LDAMixin (class in tethne.model.corpus) LDAModel (class in tethne.model.corpus.mallet) list_topic() (tethne.model.corpus.LDAMixin method)

list_topics() (tethne.model.corpus.LDAMixin method) ll_trace (tethne.model.Model attribute) load() (tethne.model.corpus.mallet.LDAModel method)

M

mallet_path (tethne.model.corpus.mallet.LDAModel attribute) mallet_to_phi_featureset() (in module tethne.model.corpus.mallet) mallet_to_theta_featureset() (in module tethne.model.corpus.mallet) mean() (in module tethne.utilities) merge() (in module tethne.readers) meta_elements (tethne.readers.base.RDFParser attribute) (tethne.readers.zotero.ZoteroParser attribute)

MLStripper (class in tethne.utilities) Model (class in tethne.model) multipartite() (in module tethne.networks.base) mutual_information() (in module tethne.networks.features) MyTestCase (class in tethne.tests.test_readers_scopus)

N

N_documents (tethne.classes.feature.BaseFeatureSet attribute) N_features (tethne.classes.feature.BaseFeatureSet attribute) new_entry() (tethne.readers.base.BaseParser method) (tethne.readers.base.XMLParser method) next() (tethne.readers.base.FTParser method) (tethne.readers.base.RDFParser method) (tethne.readers.base.XMLParser method) (tethne.readers.dfr.GramGenerator method) ngrams() (in module tethne.readers.dfr) node_distribution() (tethne.classes.graphcollection.GraphCollection method)

node_history() (tethne.classes.graphcollection.GraphCollection method) nodes() (tethne.classes.graphcollection.GraphCollection method) nonzero() (in module tethne.utilities) norm (tethne.classes.feature.Feature attribute) normalize() (in module tethne.utilities) number() (in module tethne.utilities)

O

open() (tethne.readers.base.FTParser method) (tethne.readers.base.RDFParser method) (tethne.readers.base.XMLParser method) (tethne.readers.dfr.DfRParser method) (tethne.readers.zotero.ZoteroParser method) order() (tethne.classes.graphcollection.GraphCollection method)

overlap() (in module tethne.utilities)

P

Paper (class in tethne.classes.paper) paper_source_map (tethne.serialize.paper.Serialize attribute) papers (tethne.classes.corpus.Corpus attribute) (tethne.classes.streaming.StreamingCorpus attribute) papers_containing() (tethne.classes.feature.BaseFeatureSet method) parse() (tethne.readers.base.IterParser method) (tethne.readers.base.RDFParser method) (tethne.readers.base.XMLParser method) parse_author() (tethne.readers.wos.WoSParser method) plot_burstness() (in module tethne.plot) plot_sigma() (in module tethne.plot) postprocess_authorAddress() (tethne.readers.wos.WoSParser method) postprocess_authorKeywords() (tethne.readers.wos.WoSParser method) postprocess_authors_full() (tethne.readers.dfr.DfRParser method) (tethne.readers.wos.WoSParser method)

postprocess_authors_init() (tethne.readers.wos.WoSParser method) postprocess_citedReferences() (tethne.readers.wos.WoSParser method) postprocess_entry() (tethne.readers.base.BaseParser method) postprocess_funding() (tethne.readers.wos.WoSParser method) postprocess_keywordsPlus() (tethne.readers.wos.WoSParser method) postprocess_link() (tethne.readers.zotero.ZoteroParser method) postprocess_pages() (tethne.readers.zotero.ZoteroParser method) postprocess_subject() (tethne.readers.wos.WoSParser method) postprocess_WC() (tethne.readers.wos.WoSParser method) prep() (tethne.model.corpus.mallet.LDAModel method) print_topics() (tethne.model.corpus.LDAMixin method)

R

RDFParser (class in tethne.readers.base) read() (in module tethne.readers.dfr) (in module tethne.readers.wos) (in module tethne.readers.zotero)

read_corpus() (in module tethne.readers.wos) run() (tethne.model.corpus.mallet.LDAModel method)

S

select() (tethne.classes.corpus.Corpus method) Serialize (class in tethne.serialize.paper) serialize() (in module tethne.serialize.paper) serializeAuthorInstances() (tethne.serialize.paper.Serialize method) serializeAuthors() (tethne.serialize.paper.Serialize method) serializeCitation() (tethne.serialize.paper.Serialize method) serializeCitationInstance() (tethne.serialize.paper.Serialize method) serializeCorpus() (tethne.serialize.paper.Serialize method) serializeInstitution() (tethne.serialize.paper.Serialize method) serializePaper() (tethne.serialize.paper.Serialize method) SerializeUtility (class in tethne.serialize.paper) set_value() (tethne.readers.base.BaseParser method) setUp() (tethne.tests.test_analyze_corpus.TestBurstness method) (tethne.tests.test_analyze_corpus.TestFeatureBurstness method) (tethne.tests.test_analyze_corpus.TestSigma method) (tethne.tests.test_classes_corpus.TestCorpus method) (tethne.tests.test_classes_graphcollection.TestGraphCollectionMethods method) (tethne.tests.test_classes_streamingcorpus.TestStreamingCorpus method) (tethne.tests.test_classes_structuredfeature.TestStructuredFeature method) (tethne.tests.test_classes_structuredfeature.TestStructuredFeatureSet method) (tethne.tests.test_models_lda.TestHelpers method) (tethne.tests.test_models_lda.TestLDAModel method) (tethne.tests.test_models_lda.TestLDAModelExistingOutput method) (tethne.tests.test_models_lda.TestLDAModelUnstructured method) (tethne.tests.test_models_lda.TestLDAModelWithTransformation method) (tethne.tests.test_networks_authors.TestAuthorPapers method) (tethne.tests.test_networks_authors.TestCoauthors method) (tethne.tests.test_networks_base.TestBaseNetworkMethods method) (tethne.tests.test_networks_base.TestBaseNetworkMethodsWithStreaming method) (tethne.tests.test_networks_features.TestAuthorPapers method) (tethne.tests.test_networks_papers.TestAuthorPapers method) (tethne.tests.test_networks_papers.TestAuthorPapersWithStreaming method) (tethne.tests.test_readers_merge.TestMerge method) (tethne.tests.test_readers_scopus.MyTestCase method) (tethne.tests.test_readers_wos.TestWithStarCR method) (tethne.tests.test_writers_collection.TestToDXGMML method) (tethne.tests.test_writers_corpus.WriteDocumentsDTMTest method) (tethne.tests.test_writers_corpus.WriteDocumentsTest method) (tethne.tests.test_writers_graph.CSVTest method) (tethne.tests.test_writers_graph.GraphMLTest method) sigma() (in module tethne.analyze.corpus) simplify_multigraph() (in module tethne.networks.helpers) size() (tethne.classes.graphcollection.GraphCollection method)

slice() (tethne.classes.corpus.Corpus method) start() (tethne.readers.base.IterParser method) (tethne.readers.base.XMLParser method) start_tag (tethne.readers.base.FTParser attribute) (tethne.readers.wos.WoSParser attribute) streaming_read() (in module tethne.readers.dfr) (in module tethne.readers.wos) StreamingCorpus (class in tethne.classes.streaming) StreamingIndex (class in tethne.classes.streaming) strip_non_ascii() (in module tethne.utilities) strip_punctuation() (in module tethne.utilities) strip_tags() (in module tethne.utilities) StructuredFeature (class in tethne.classes.feature) StructuredFeatureSet (class in tethne.classes.feature) subcorpus() (tethne.classes.corpus.Corpus method) subdict() (in module tethne.utilities) subfeatures() (tethne.classes.corpus.Corpus method) swap() (in module tethne.utilities)

T

tags (tethne.readers.base.IterParser attribute) (tethne.readers.dfr.DfRParser attribute) (tethne.readers.wos.WoSParser attribute) (tethne.readers.zotero.ZoteroParser attribute) tearDown() (tethne.tests.test_writers_graph.CSVTest method) (tethne.tests.test_writers_graph.GraphMLTest method) terms() (in module tethne.networks.topics) test_add() (tethne.tests.test_classes_graphcollection.TestGraphCollectionCreation method) test_add_context() (tethne.tests.test_classes_structuredfeature.TestStructuredFeature method) test_add_feature() (tethne.tests.test_classes_feature.TestFeatureSet method) test_all_None_args() (tethne.tests.test_readers_dfr.TestCreateAyijid method) test_analyze() (tethne.tests.test_classes_graphcollection.TestGraphCollectionMethods method) test_analyze_edge() (tethne.tests.test_classes_graphcollection.TestGraphCollectionMethods method) test_analyze_graph() (tethne.tests.test_classes_graphcollection.TestGraphCollectionMethods method) test_analyze_path() (tethne.tests.test_classes_graphcollection.TestGraphCollectionMethods method) test_angular_similarity() (tethne.tests.test_analyze_features.TestAngularSimilarity method) test_angular_similarity_citations() (tethne.tests.test_analyze_features.TestAngularSimilarity method) test_arg_max_num() (tethne.tests.test_utilities.TestArgMax method) test_arg_max_str() (tethne.tests.test_utilities.TestArgMax method) test_as_matrix() (tethne.tests.test_classes_feature.TestFeatureSet method) test_as_vector() (tethne.tests.test_classes_feature.TestFeatureSet method) test_attribs() (tethne.tests.test_utilities.TestAttribsToString method) test_author_coupling() (tethne.tests.test_networks_papers.TestAuthorPapers method) (tethne.tests.test_networks_papers.TestAuthorPapersWithStreaming method) test_author_papers() (tethne.tests.test_networks_authors.TestAuthorPapers method) (tethne.tests.test_networks_authors.TestCoauthors method) test_authors() (tethne.tests.test_readers_zotero.TestZoteroParser method) test_authors_full() (tethne.tests.test_readers_zotero.TestZoteroParser method) test_badpath() (tethne.tests.test_readers_base.TestFTParser method) test_bibliographic_coupling() (tethne.tests.test_networks_papers.TestAuthorPapers method) (tethne.tests.test_networks_papers.TestAuthorPapersWithStreaming method) test_both_not_empty() (tethne.tests.test_utilities.TestOverlap method) test_build() (tethne.tests.test_classes_graphcollection.TestGraphCollectionCreation method) test_build_streaming() (tethne.tests.test_classes_graphcollection.TestGraphCollectionCreation method) test_burstness() (tethne.tests.test_analyze_corpus.TestBurstness method) test_citation_count() (tethne.tests.test_networks_helpers.TestCitationCount method) test_citations_file() (tethne.tests.test_readers_dfr.TestCitationFile method) test_citedRefs() (tethne.tests.test_readers_wos.TestWithStarCR method) test_cocitation() (tethne.tests.test_networks_papers.TestAuthorPapers method) (tethne.tests.test_networks_papers.TestAuthorPapersWithStreaming method) test_collapse() (tethne.tests.test_classes_graphcollection.TestGraphCollectionMethods method) test_contains_false() (tethne.tests.test_utilities.TestContains method) test_contains_true() (tethne.tests.test_utilities.TestContains method) test_coocurrence() (tethne.tests.test_networks_base.TestBaseNetworkMethods method) (tethne.tests.test_networks_base.TestBaseNetworkMethodsWithStreaming method) test_coocurrence_feature() (tethne.tests.test_networks_base.TestBaseNetworkMethods method) (tethne.tests.test_networks_base.TestBaseNetworkMethodsWithStreaming method) test_cosine_similarity() (tethne.tests.test_analyze_features.TestCosineSimilarity method) test_cosine_similarity_citations() (tethne.tests.test_analyze_features.TestCosineSimilarity method) test_coupling() (tethne.tests.test_networks_base.TestBaseNetworkMethods method) (tethne.tests.test_networks_base.TestBaseNetworkMethodsWithStreaming method) test_coupling_feature() (tethne.tests.test_networks_base.TestBaseNetworkMethods method) (tethne.tests.test_networks_base.TestBaseNetworkMethodsWithStreaming method) test_coupling_min_weight() (tethne.tests.test_networks_base.TestBaseNetworkMethods method) (tethne.tests.test_networks_base.TestBaseNetworkMethodsWithStreaming method) test_dfr2paper() (tethne.tests.test_readers_dfr.TestDfr2PaperMap method) test_dict_from_node() (tethne.tests.test_utilities.TestDictFromNode method) test_dict_from_node_rec_false() (tethne.tests.test_utilities.TestDictFromNode method) test_dict_from_node_rec_True() (tethne.tests.test_utilities.TestDictFromNode method) test_direct_citation() (tethne.tests.test_networks_papers.TestAuthorPapers method) (tethne.tests.test_networks_papers.TestAuthorPapersWithStreaming method) test_direct_import() (tethne.tests.test_models_lda.TestLDAModelMALLETPath method) test_distribution() (tethne.tests.test_classes_corpus.TestCorpus method) (tethne.tests.test_classes_streamingcorpus.TestStreamingCorpus method) test_duplicate_Papers_length() (tethne.tests.test_readers_zotero.TestZoteroDuplicates method) test_edge_history() (tethne.tests.test_classes_graphcollection.TestGraphCollectionMethods method) test_edges() (tethne.tests.test_classes_graphcollection.TestGraphCollectionMethods method) test_empty_feature() (tethne.tests.test_classes_feature.TestFeatureSet method) test_empty_listA() (tethne.tests.test_utilities.TestOverlap method) test_empty_listB() (tethne.tests.test_utilities.TestOverlap method) test_empty_string() (tethne.tests.test_utilities.TestStripPunctual2 method) test_end_to_end() (tethne.tests.test_classes_feature.TestFeatureSet method) (tethne.tests.test_classes_structuredfeature.TestStructuredFeatureSetToGensim method) test_end_to_end_raw() (tethne.tests.test_classes_feature.TestFeatureSet method) (tethne.tests.test_classes_structuredfeature.TestStructuredFeatureSetToGensim method) test_EqualSize() (tethne.tests.test_utilities.TestConcatList method) test_EqualSize_Default() (tethne.tests.test_utilities.TestConcatList method) test_extend() (tethne.tests.test_classes_feature.TestFeature method) test_feature_burstness() (tethne.tests.test_analyze_corpus.TestFeatureBurstness method) test_feature_burstness_() (tethne.tests.test_analyze_corpus.TestBurstness method) test_feature_burstness_nonorm() (tethne.tests.test_analyze_corpus.TestFeatureBurstness method) test_feature_cooccurrence() (tethne.tests.test_networks_features.TestAuthorPapers method) test_feature_distribution() (tethne.tests.test_classes_corpus.TestCorpus method) (tethne.tests.test_classes_streamingcorpus.TestStreamingCorpus method) test_featureselector() (tethne.tests.test_classes_corpus.TestCorpus method) (tethne.tests.test_classes_streamingcorpus.TestStreamingCorpus method) test_featureset() (tethne.tests.test_classes_feature.TestFeatureSetWithData method) test_float_weights() (tethne.tests.test_readers_dfr.TestNGrams method) test_getattr() (tethne.tests.test_classes_graphcollection.TestGraphCollectionMethods method) test_getitem() (tethne.tests.test_classes_corpus.TestCorpus method) (tethne.tests.test_classes_streamingcorpus.TestStreamingCorpus method) test_global_closeness() (tethne.tests.test_analyze_graph.TestGlobalCloseness method) test_global_closeness_node() (tethne.tests.test_analyze_graph.TestGlobalCloseness method) test_handle() (tethne.tests.test_readers_base.TestFTParser method) (tethne.tests.test_readers_base.TestXMLParser method) test_handle_author_JR() (tethne.tests.test_readers_dfr.TestHandleAuthor method) test_handle_author_NOJR() (tethne.tests.test_readers_dfr.TestHandleAuthor method) test_handle_authors_list() (tethne.tests.test_readers_dfr.TestHandleAuthors method) test_handle_authors_String() (tethne.tests.test_readers_dfr.TestHandleAuthors method) test_handle_date() (tethne.tests.test_readers_zotero.TestZoteroParser method) test_handle_pagerange() (tethne.tests.test_readers_dfr.TestHandlePageRange method) test_handle_pagerange_noNumbers() (tethne.tests.test_readers_dfr.TestHandlePageRange method) test_handle_Paper() (tethne.tests.test_readers_dfr.TestHandlePaper method) test_iadd() (tethne.tests.test_classes_feature.TestFeature method) test_index() (tethne.tests.test_classes_graphcollection.TestGraphCollectionCreation method) test_indexing() (tethne.tests.test_classes_corpus.TestCorpus method) (tethne.tests.test_classes_streamingcorpus.TestStreamingCorpus method) test_infer() (tethne.tests.test_readers_zotero.TestInferSpaces method) test_init() (tethne.tests.test_classes_corpus.TestCorpus method) (tethne.tests.test_classes_graphcollection.TestGraphCollectionCreation method) (tethne.tests.test_classes_streamingcorpus.TestStreamingCorpus method) (tethne.tests.test_classes_structuredfeature.TestStructuredFeature method) (tethne.tests.test_classes_structuredfeature.TestStructuredFeatureSet method) test_init_build() (tethne.tests.test_classes_graphcollection.TestGraphCollectionCreation method) test_init_build_streaming() (tethne.tests.test_classes_graphcollection.TestGraphCollectionCreation method) test_init_counts() (tethne.tests.test_classes_feature.TestFeature method) test_init_datum() (tethne.tests.test_classes_feature.TestFeature method) test_init_directed() (tethne.tests.test_classes_graphcollection.TestGraphCollectionCreation method) test_init_empty() (tethne.tests.test_classes_feature.TestFeatureSet method) test_init_features() (tethne.tests.test_classes_feature.TestFeatureSet method) test_init_list() (tethne.tests.test_classes_feature.TestFeature method) test_init_tuples() (tethne.tests.test_classes_feature.TestFeature method) test_isub() (tethne.tests.test_classes_feature.TestFeature method) test_key_int() (tethne.tests.test_utilities.TestGetItem method) (tethne.tests.test_utilities.TestSetItem method) test_key_str() (tethne.tests.test_utilities.TestGetItem method) (tethne.tests.test_utilities.TestSetItem method) test_keyword_cooccurrence() (tethne.tests.test_networks_features.TestAuthorPapers method) test_kl_divergence() (tethne.tests.test_analyze_features.TestKLDivergence method) test_kl_divergence_citations() (tethne.tests.test_analyze_features.TestKLDivergence method) test_ldamodel() (tethne.tests.test_models_lda.TestLDAModel method) (tethne.tests.test_models_lda.TestLDAModelUnstructured method) (tethne.tests.test_models_lda.TestLDAModelWithTransformation method) test_load_existing_data() (tethne.tests.test_models_lda.TestLDAModelExistingOutput method) test_load_existing_data_staticmethod() (tethne.tests.test_models_lda.TestLDAModelExistingOutput method) test_mallet_to_phi_featureset() (tethne.tests.test_models_lda.TestHelpers method) test_mallet_to_theta_featureset() (tethne.tests.test_models_lda.TestHelpers method) test_merge() (tethne.tests.test_readers_merge.TestMerge method) test_merge_both_empty() (tethne.tests.test_readers_merge.TestMerge method) test_merge_comparator() (tethne.tests.test_readers_merge.TestMerge method) test_merge_equal() (tethne.tests.test_readers_merge.TestMerge method) test_merge_not_equal() (tethne.tests.test_readers_merge.TestMerge method) test_merge_one_empty() (tethne.tests.test_readers_merge.TestMerge method) test_multipartite() (tethne.tests.test_networks_base.TestBaseNetworkMethods method) (tethne.tests.test_networks_base.TestBaseNetworkMethodsWithStreaming method) test_mutual_information() (tethne.tests.test_networks_features.TestAuthorPapers method) test_networks() (tethne.tests.test_models_lda.TestLDAModel method) (tethne.tests.test_models_lda.TestLDAModelUnstructured method) (tethne.tests.test_models_lda.TestLDAModelWithTransformation method) test_next() (tethne.tests.test_readers_base.TestFTParser method) test_ngrams() (tethne.tests.test_readers_dfr.TestNGrams method) test_no_auinit() (tethne.tests.test_readers_dfr.TestCreateAyijid method) test_no_aulast() (tethne.tests.test_readers_dfr.TestCreateAyijid method) test_node_history() (tethne.tests.test_classes_graphcollection.TestGraphCollectionMethods method) test_nodes() (tethne.tests.test_classes_graphcollection.TestGraphCollectionMethods method) test_NonEmpty() (tethne.tests.test_utilities.TestSubDict method) test_norm() (tethne.tests.test_classes_feature.TestFeature method) test_order() (tethne.tests.test_classes_graphcollection.TestGraphCollectionMethods method) test_parse() (tethne.tests.test_readers_base.TestFTParser method) (tethne.tests.test_readers_base.TestXMLParser method) (tethne.tests.test_readers_wos.TestWoSParser method) (tethne.tests.test_readers_zotero.TestZoteroParser method) test_read() (tethne.tests.test_readers_dfr.TestDFRReader method) (tethne.tests.test_readers_dfr.TestDFRReaderStreaming method) (tethne.tests.test_readers_wos.TestWoSParser method) (tethne.tests.test_readers_wos.TestWoSParserStreaming method) (tethne.tests.test_readers_zotero.TestZoteroParser method) test_read_files() (tethne.tests.test_readers_zotero.TestZoteroParser method) test_read_nocorpus() (tethne.tests.test_readers_wos.TestWoSParser method) (tethne.tests.test_readers_zotero.TestZoteroParser method) test_select() (tethne.tests.test_classes_structuredfeature.TestStructuredFeature method) test_select_chunk() (tethne.tests.test_classes_structuredfeature.TestStructuredFeature method) test_select_context() (tethne.tests.test_classes_structuredfeature.TestStructuredFeatureSet method) test_sigma() (tethne.tests.test_analyze_corpus.TestSigma method) test_simplify_multigraph() (tethne.tests.test_networks_helpers.TestSimplifyMultigraph method) test_size() (tethne.tests.test_classes_graphcollection.TestGraphCollectionMethods method) test_slice() (tethne.tests.test_classes_corpus.TestCorpus method) (tethne.tests.test_classes_streamingcorpus.TestStreamingCorpus method) test_slice_index_only() (tethne.tests.test_classes_corpus.TestCorpus method) test_slice_larger() (tethne.tests.test_classes_corpus.TestCorpus method) (tethne.tests.test_classes_streamingcorpus.TestStreamingCorpus method) test_slice_larger_index_only() (tethne.tests.test_classes_corpus.TestCorpus method) test_slice_sliding() (tethne.tests.test_classes_corpus.TestCorpus method) (tethne.tests.test_classes_streamingcorpus.TestStreamingCorpus method) test_slice_sliding_index_only() (tethne.tests.test_classes_corpus.TestCorpus method) test_start() (tethne.tests.test_readers_base.TestFTParser method) test_str() (tethne.tests.test_utilities.TestStripPunctuation method) test_string() (tethne.tests.test_utilities.TestStripPunctual2 method) test_to_gensim_corpus() (tethne.tests.test_classes_structuredfeature.TestStructuredFeatureSetToGensim method) test_top() (tethne.tests.test_classes_feature.TestFeatureSet method) test_top_features() (tethne.tests.test_classes_corpus.TestCorpus method) (tethne.tests.test_classes_streamingcorpus.TestStreamingCorpus method) test_transform() (tethne.tests.test_classes_feature.TestFeatureSet method) (tethne.tests.test_classes_structuredfeature.TestStructuredFeatureSet method) (tethne.tests.test_readers_dfr.TestDFRReader method) test_unicode() (tethne.tests.test_utilities.TestStripPunctuation method) test_union() (tethne.tests.test_classes_graphcollection.TestGraphCollectionMethods method) test_write_csv() (tethne.tests.test_writers_graph.CSVTest method) test_write_documents() (tethne.tests.test_writers_corpus.WriteDocumentsTest method)

test_write_documents_dtm() (tethne.tests.test_writers_corpus.WriteDocumentsDTMTest method) test_write_dxgmml() (tethne.tests.test_writers_collection.TestToDXGMML method) test_write_graphml() (tethne.tests.test_writers_graph.GraphMLTest method) TestAngularSimilarity (class in tethne.tests.test_analyze_features) TestArgMax (class in tethne.tests.test_utilities) TestAttribsToString (class in tethne.tests.test_utilities) TestAuthorPapers (class in tethne.tests.test_networks_authors) (class in tethne.tests.test_networks_features) (class in tethne.tests.test_networks_papers) TestAuthorPapersWithStreaming (class in tethne.tests.test_networks_papers) TestBaseNetworkMethods (class in tethne.tests.test_networks_base) TestBaseNetworkMethodsWithStreaming (class in tethne.tests.test_networks_base) testBasic() (tethne.tests.test_writers_graph.TestToSif method) TestBurstness (class in tethne.tests.test_analyze_corpus) TestCitationCount (class in tethne.tests.test_networks_helpers) TestCitationFile (class in tethne.tests.test_readers_dfr) TestCoauthors (class in tethne.tests.test_networks_authors) TestConcatList (class in tethne.tests.test_utilities) TestContains (class in tethne.tests.test_utilities) TestCorpus (class in tethne.tests.test_classes_corpus) TestCosineSimilarity (class in tethne.tests.test_analyze_features) TestCreateAyijid (class in tethne.tests.test_readers_dfr) TestDfr2PaperMap (class in tethne.tests.test_readers_dfr) TestDFRReader (class in tethne.tests.test_readers_dfr) TestDFRReaderStreaming (class in tethne.tests.test_readers_dfr) TestDictFromNode (class in tethne.tests.test_utilities) TestFeature (class in tethne.tests.test_classes_feature) TestFeatureBurstness (class in tethne.tests.test_analyze_corpus) TestFeatureSet (class in tethne.tests.test_classes_feature) TestFeatureSetWithData (class in tethne.tests.test_classes_feature) TestFTParser (class in tethne.tests.test_readers_base) TestGetItem (class in tethne.tests.test_utilities) TestGlobalCloseness (class in tethne.tests.test_analyze_graph) TestGraphCollectionCreation (class in tethne.tests.test_classes_graphcollection) TestGraphCollectionMethods (class in tethne.tests.test_classes_graphcollection) testGraphZeroEdges() (tethne.tests.test_writers_graph.TestToSif method) TestHandleAuthor (class in tethne.tests.test_readers_dfr) TestHandleAuthors (class in tethne.tests.test_readers_dfr) TestHandlePageRange (class in tethne.tests.test_readers_dfr) TestHandlePaper (class in tethne.tests.test_readers_dfr) TestHelpers (class in tethne.tests.test_models_lda) TestInferSpaces (class in tethne.tests.test_readers_zotero) TestKLDivergence (class in tethne.tests.test_analyze_features) TestLDAModel (class in tethne.tests.test_models_lda) TestLDAModelExistingOutput (class in tethne.tests.test_models_lda) TestLDAModelMALLETPath (class in tethne.tests.test_models_lda) TestLDAModelUnstructured (class in tethne.tests.test_models_lda) TestLDAModelWithTransformation (class in tethne.tests.test_models_lda) TestMerge (class in tethne.tests.test_readers_merge) testMultiGraph() (tethne.tests.test_writers_graph.TestToSif method) TestNGrams (class in tethne.tests.test_readers_dfr) TestOverlap (class in tethne.tests.test_utilities) TestSetItem (class in tethne.tests.test_utilities) TestSigma (class in tethne.tests.test_analyze_corpus) TestSimplifyMultigraph (class in tethne.tests.test_networks_helpers) TestStreamingCorpus (class in tethne.tests.test_classes_streamingcorpus) TestStripPunctual2 (class in tethne.tests.test_utilities) TestStripPunctuation (class in tethne.tests.test_utilities) TestStructuredFeature (class in tethne.tests.test_classes_structuredfeature) TestStructuredFeatureSet (class in tethne.tests.test_classes_structuredfeature) TestStructuredFeatureSetToGensim (class in tethne.tests.test_classes_structuredfeature) TestSubDict (class in tethne.tests.test_utilities) TestToDXGMML (class in tethne.tests.test_writers_collection) TestToSif (class in tethne.tests.test_writers_graph) TestWithStarCR (class in tethne.tests.test_readers_wos) TestWoSParser (class in tethne.tests.test_readers_wos) TestWoSParserStreaming (class in tethne.tests.test_readers_wos) TestXMLParser (class in tethne.tests.test_readers_base) TestZoteroDuplicates (class in tethne.tests.test_readers_zotero) TestZoteroParser (class in tethne.tests.test_readers_zotero) tethne (module) tethne.analyze (module) tethne.analyze.collection (module) tethne.analyze.corpus (module) tethne.analyze.features (module) tethne.analyze.graph (module) tethne.bin (module) tethne.classes (module) tethne.classes.corpus (module) tethne.classes.feature (module) tethne.classes.graphcollection (module) tethne.classes.paper (module) tethne.classes.streaming (module) tethne.dao (module) tethne.dao.tethnedao (module) tethne.model (module) tethne.model.corpus (module) tethne.model.corpus.mallet (module) tethne.networks (module) tethne.networks.authors (module) tethne.networks.base (module) tethne.networks.features (module) tethne.networks.helpers (module) tethne.networks.papers (module) tethne.networks.topics (module) tethne.plot (module) tethne.readers (module) tethne.readers.base (module) tethne.readers.dfr (module) tethne.readers.dspace (module) tethne.readers.scopus (module) tethne.readers.wos (module) tethne.readers.zotero (module) tethne.serialize (module) tethne.serialize.paper (module) tethne.tests (module) tethne.tests.test_analyze_corpus (module) tethne.tests.test_analyze_features (module) tethne.tests.test_analyze_graph (module) tethne.tests.test_classes_corpus (module) tethne.tests.test_classes_feature (module) tethne.tests.test_classes_graphcollection (module) tethne.tests.test_classes_streamingcorpus (module) tethne.tests.test_classes_structuredfeature (module) tethne.tests.test_model_social_tapmodel (module) tethne.tests.test_models_lda (module) tethne.tests.test_networks_authors (module) tethne.tests.test_networks_base (module) tethne.tests.test_networks_features (module) tethne.tests.test_networks_helpers (module) tethne.tests.test_networks_papers (module) tethne.tests.test_readers_base (module) tethne.tests.test_readers_dfr (module) tethne.tests.test_readers_merge (module) tethne.tests.test_readers_scopus (module) tethne.tests.test_readers_wos (module) tethne.tests.test_readers_zotero (module) tethne.tests.test_utilities (module) tethne.tests.test_writers_collection (module) tethne.tests.test_writers_corpus (module) tethne.tests.test_writers_graph (module) tethne.utilities (module) tethne.writers (module) tethne.writers.collection (module) tethne.writers.corpus (module) tethne.writers.graph (module) tethne.writers.matrix (module) TethneGraphMLWriter (class in tethne.writers.graph) to_dxgmml() (in module tethne.writers.collection) to_gensim_corpus() (tethne.classes.feature.FeatureSet method) (tethne.classes.feature.StructuredFeatureSet method) to_gexf() (in module tethne.writers.graph) to_graphml() (in module tethne.writers.graph) to_sif() (in module tethne.writers.graph) to_table() (in module tethne.writers.graph) tokenize() (in module tethne.readers.dfr) (in module tethne.utilities) top() (tethne.classes.feature.BaseFeatureSet method) (tethne.classes.feature.Feature method) top_cited() (in module tethne.networks.helpers) top_features() (tethne.classes.corpus.Corpus method) top_parents() (in module tethne.networks.helpers) topic_coupling() (in module tethne.networks.topics) topic_over_time() (tethne.model.corpus.LDAMixin method) topics_in() (tethne.model.corpus.LDAMixin method) transform() (tethne.classes.feature.FeatureSet method) (tethne.classes.feature.StructuredFeatureSet method) translate() (tethne.classes.feature.FeatureSet method)

U

union() (tethne.classes.graphcollection.GraphCollection method) unique (tethne.classes.feature.BaseFeatureSet attribute) (tethne.classes.feature.Feature attribute) (tethne.classes.feature.StructuredFeature attribute)

update() (tethne.classes.streaming.StreamingIndex method)

V

value() (tethne.classes.feature.Feature method)

values() (tethne.classes.streaming.StreamingIndex method) (tethne.readers.dfr.GramGenerator method)

W

WoSParser (class in tethne.readers.wos) write_csv() (in module tethne.writers.graph) write_documents() (in module tethne.writers.corpus) write_documents_dtm() (in module tethne.writers.corpus)

write_graphml() (in module tethne.writers.graph) WriteDocumentsDTMTest (class in tethne.tests.test_writers_corpus) WriteDocumentsTest (class in tethne.tests.test_writers_corpus)

X

XMLParser (class in tethne.readers.base)

Z

ZoteroParser (class in tethne.readers.zotero)